rs2555173 chr11:6612377 G>T
- Sequence
aataggctgcagggcggagaccga[G/T]ccttggcgaactgcgctgccgtag
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HEK293T (embryonic kidney) VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXK2_HUMAN HDAC1_HUMAN GABPA_HUMAN REQU_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 1.70 | 0.96 | 1.83 | n/a | n/a | |||
| HDAC1_HUMAN | -0.93 | 1.87 | 2.00 | n/a | n/a | |||
| GABPA_HUMAN | 0.22 | 1.39 | 1.87 | n/a | No Hit | |||
| REQU_HUMAN | -1.01 | 1.94 | 2.00 | n/a | n/a | |||
| NCOR1_HUMAN | -0.95 | 1.52 | 2.00 | n/a | n/a |
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