rs256987 chr5:115574625 T>C
- Sequence
gcaaaggagaagagagaagagcaa[T/C]tgtctttctttttttccacaagtt
- ASB in cell types
- A549 (lung carcinoma) 22RV1 (prostate carcinoma) neural cell K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.45 | 0.83 | 1.42 | n/a | No Hit | |||
| SMC3_HUMAN | 0.37 | 0.93 | 1.92 | n/a | n/a | |||
| RAD21_HUMAN | 0.93 | 0.71 | 1.78 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Whole_Blood