rs2581896 chr8:33513467 A>G
- Sequence
acttggcactccttaatgtcaact[A/G]taagatgatccttttgtagttcat
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) K562 (myelogenous leukemia) D283 Med (medulloblastoma)
- ASB for transcription factors
- FOXA2_HUMAN CTCF_HUMAN HTF4_HUMAN NDF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -0.82 | 2.11 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.32 | 0.85 | 1.35 | n/a | No Hit | |||
| HTF4_HUMAN | 0.24 | 2.52 | 1.67 | n/a | No Hit | |||
| NDF1_HUMAN | -0.25 | 1.28 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, comorbid depressive syndrome and alcohol dependence, hdl cholesterol, salmonella-induced pyroptosis, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood