rs2584624 chr17:63827186 A>G
- Sequence
tgagtgtggccctagattgttctc[A/G]atactctgtccttgggttttgtaa
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- NR2C1_HUMAN GABPA_HUMAN ZBT40_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2C1_HUMAN | 0.57 | n/a | 1.78 | n/a | No Hit | |||
| GABPA_HUMAN | 1.32 | 0.09 | 1.96 | n/a | No Hit | |||
| ZBT40_HUMAN | 0.37 | -0.30 | 1.75 | n/a | n/a | |||
| GABP1_HUMAN | 0.30 | -2.06 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 1.32 | -0.34 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, body mass index (bmi), eur students <30 cowa, general white matter integrity factor, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood