rs259278 chr19:32670220 C>T
- Sequence
gtgcggacagggcctgctgttatc[C/T]agccccaagtcatctgctttatct
- ASB in cell types
- LNCaP (prostate carcinoma) A549 (lung carcinoma) VCaP (prostate carcinoma) ZR-75-1 (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.20 | 0.12 | 1.81 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, cystatin c in serum, hdl cholesterol, parkinsons disease, serum creatinine, triglycerides
GTEx eQTL Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_EBV-transformed_lymphocytes, Heart_Atrial_Appendage, Nerve_Tibial, Testis, Thyroid