rs259723 chr6:37820444 C>T
- Sequence
ctaggagggtatttcctctgactt[C/T]ttcacctcccctcctccccgtcct
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) CD14+ monocytes GM12878 (female B-cells)
- ASB for transcription factors
- STAT1_HUMAN TF65_HUMAN ARI1B_HUMAN HDAC1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | n/a | 2.62 | 2.50 | n/a | No Hit | |||
| TF65_HUMAN | 1.39 | 3.07 | 1.88 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.80 | n/a | 3.00 | n/a | n/a | |||
| HDAC1_HUMAN | 1.65 | -0.98 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg