rs260438 chr19:58228973 T>G
- Sequence
gagtctggcggcctcaaggttggc[T/G]cggaggtttcactgttagccgggt
- ASB in cell types
- HEK293 (embryonic kidney) VCaP (prostate carcinoma) Human Umbilical Cord Blood-Derived Erythroid Progenitor Cells-2 (HUDEP-2) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERG_HUMAN | 2.34 | -0.48 | 2.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood