rs2607070 chr8:94242250 C>T
- Sequence
ccagcctcatcaacatcatcatct[C/T]ggctgtgactcagatcatccacac
- ASB in cell types
- A549 (lung carcinoma) LNCaP (prostate carcinoma) HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- FOXA1_HUMAN JUN_HUMAN GCR_HUMAN EP300_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.56 | 1.12 | 1.56 | n/a | No Hit | |||
| JUN_HUMAN | -0.01 | 1.15 | 1.77 | n/a | No Hit | |||
| GCR_HUMAN | -0.47 | 1.35 | 1.92 | n/a | No Hit | |||
| EP300_HUMAN | -0.20 | 1.10 | 1.85 | n/a | n/a | |||
| RAD21_HUMAN | -0.26 | 0.80 | 1.94 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GRASP diastolic blood pressure (dbp), hypertension (early onset hypertension), ldl cholesterol, systolic blood pressure (sbp), transmission distortion, years of education