rs261342 chr15:58438954 G>C
- Sequence
ggggaaaaagtgaagagaagagaa[G/C]gaaatgcatggaatgcaagcggag
- ASB in cell types
- foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.22 | 0.90 | 1.35 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
EMBL-EBI high density lipoprotein cholesterol levels, metabolite levels, total cholesterol levels, triglycerides
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), apoa1 (apolipoprotein ai), hdl cholesterol, hdl cholesterol change with statins, microalbuminuria, total cholesterol, triglycerides, urinary albumin-to-creatinine ratio