rs2616093 chr10:69630110 C>T
- Sequence
cccacctcccactccttcccacgc[C/T]ccatctccccgacccccagcaccc
- ASB in cell types
- K562 (myelogenous leukemia) foreskin keratinocyte MCF7 (Invasive ductal breast carcinoma) neural cell
- ASB for transcription factors
- EGR1_HUMAN CTCF_HUMAN HDAC1_HUMAN ZN316_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | -0.70 | 1.36 | 1.33 | -0.76 | Weak Discordant | |||
| CTCF_HUMAN | 0.41 | 0.69 | 1.52 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.62 | 1.59 | 1.33 | n/a | n/a | |||
| ZN316_HUMAN | -0.73 | 1.75 | 1.33 | n/a | n/a | |||
| KDM1A_HUMAN | -0.87 | 1.68 | 1.33 | n/a | n/a |
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Motif analysis
