rs2618567 chr20:17863848 G>T
- Sequence
tggaaaatccagggaccatcccag[G/T]cccagctgcgctccaggaagaaac
- ASB in cell types
- HepG2 (hepatoblastoma) liver
- ASB for transcription factors
- TEAD3_HUMAN FOXA3_HUMAN SOX5_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TEAD3_HUMAN | 3.08 | n/a | 1.33 | n/a | n/a | |||
| FOXA3_HUMAN | 3.02 | -3.54 | 1.33 | n/a | No Hit | |||
| SOX5_HUMAN | 2.85 | -3.27 | 1.33 | n/a | No Hit | |||
| CEBPA_HUMAN | 2.83 | -0.04 | 1.42 | n/a | No Hit | |||
| CREB1_HUMAN | 1.75 | -1.27 | 1.46 | n/a | No Hit |
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Motif analysis
