rs2645433 chr8:11800412 G>C
- Sequence
aggagacagggtcatttataacct[G/C]actcgtccaccccactgcttgtgt
- ASB in cell types
- GM12878 (female B-cells) HepG2 (hepatoblastoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- IKZF1_HUMAN CEBPG_HUMAN IKZF2_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.51 | 0.85 | 1.56 | n/a | No Hit | |||
| CEBPG_HUMAN | 2.56 | -3.22 | 1.33 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.79 | -1.26 | 1.33 | n/a | n/a | |||
| FOXA2_HUMAN | 1.87 | -1.90 | 1.33 | n/a | No Hit | |||
| ELF1_HUMAN | 2.34 | 0.21 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood