rs2661678 chr17:78176791 G>C
- Sequence
ccggatctcgctgtgtcctgtgca[G/C]tgtagggtgttgggctgcgtccct
- ASB in cell types
- A549 (lung carcinoma) CD34+ stem cells-derived erythroblasts HEK293 (embryonic kidney) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN GLIS2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.93 | 0.86 | 1.72 | n/a | No Hit | |||
| RAD21_HUMAN | 1.30 | -0.11 | 2.48 | n/a | n/a | |||
| SMC3_HUMAN | 1.36 | -0.48 | 2.76 | n/a | n/a | |||
| GLIS2_HUMAN | n/a | 1.92 | 2.00 | n/a | n/a |
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