rs267409 chr5:175460418 T>A
- Sequence
ccttgttccatgatctttcaagtt[T/A]acgtattcatttatccgatgacgt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) LHSAR (prostate epithelial cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ANDR_HUMAN ATF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.10 | -2.17 | 1.50 | -4.55 | Concordant | |||
| ATF2_HUMAN | -2.05 | 2.15 | 1.67 | n/a | No Hit |
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Motif analysis
