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rs267734 chr1:150979001 T>C

Sequence
gaaaaggtggtagattagatcctc[T/C]ctaagatttcctccaactctgcaa
ASB in cell types
K562 (myelogenous leukemia)

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
K562 (myelogenous leukemia) -0.17 0.76 1.008.5·10-15 2.09
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Motif analysis

No data available

Genetic associations

EMBL-EBI chronic kidney disease glomerular filtration rate (creatinine) glomerular filtration rate in non diabetics (creatinine)
GRASP body mass index (bmi) chronic kidney disease cystatin c in serum fasting blood glucose hdl cholesterol homa-b ldl cholesterol plasma beta-2 microglobulin levels plasma beta-trace protein levels presence of peripupillary pigmented ring serum creatinine serum creatinine estimated glomerular filtration rate (egfr) serum creatinine estimated glomerular filtration rate (egfr) (females) serum creatinine estimated glomerular filtration rate (egfr) (no diabetes) serum creatinine estimated glomerular filtration rate (egfr) (no hypertension) serum creatinine estimated glomerular filtration rate (egfr) (with hypertension) serum creatinine estimated glomerular filtration rate (egfr) age <65 serum creatinine estimated glomerular filtration rate (egfr) age >65 serum creatinine estimated glomerular filtration rate (egfr) with hypertension serum creatinine estimated glomerular filtration rate (egfr) without diabetes serum creatinine estimated glomerular filtration rate (egfr) without hypertension serum cystatin c estimated glomerular filtration rate (egfr) waist hip ratio
Finemapping chronic kidney disease
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Pancreas Pituitary Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Stomach Testis Thyroid Whole_Blood

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