rs268679 chr19:40435146 T>G
- Sequence
gcgatccttctacctcagcctcac[T/G]agtagctgggactacaggtgagca
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MGAP_HUMAN ZEB2_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MGAP_HUMAN | -2.16 | 2.36 | 2.00 | n/a | n/a | |||
| ZEB2_HUMAN | -1.39 | 1.72 | 2.00 | n/a | n/a | |||
| CEBPB_HUMAN | -2.91 | 2.14 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood