rs2701039 chr7:107983097 A>G
- Sequence
ctcatggctcactcagaaattggc[A/G]cagagctggacacatctattaaat
- ASB in cell types
- VCaP (prostate carcinoma) sigmoid colon
- ASB for transcription factors
- CTCF_HUMAN HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.28 | 1.02 | 1.36 | n/a | No Hit | |||
| HXB13_HUMAN | 1.44 | -0.76 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP infant head circumference, ldl cholesterol, neuroblastoma (brain cancer), suicide attempts in bipolar disorder, systolic blood pressure (sbp), tetrology of fallot, total plasma homocysteine, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid