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rs270164 chr5:140157447 G>T

Sequence
ttcctgacagggggcggggggtgg[G/T]ggtgggagaaagagtgaagggtgg
ASB in cell types
neural cell adrenal gland GM12878 (female B-cells) spleen
ASB for transcription factors
CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.42 1.41 1.002.2·10-22 1.44 0.89 Weak Concordant
SMC3_HUMAN -2.03 2.24 1.001.5·10-5 1.00 n/a n/a
RAD21_HUMAN -0.86 1.64 1.001.8·10-4 1.17 n/a n/a
IKZF2_HUMAN n/a 1.79 1.000.02 1.33 n/a n/a
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Motif analysis

CTCF_HUMAN Weak Concordant
CTCF_HUMAN pic

Genetic associations

No data available

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