rs271745 chr1:234487071 A>G
- Sequence
aaatcttgcatgcgttcatggtcc[A/G]gaatgcacaggcagttgcataacc
- ASB in cell types
- A549 (lung carcinoma) HEK293 (embryonic kidney) HeLa S3 (cervical adenocarcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- RAD21_HUMAN CEBPB_HUMAN SMC3_HUMAN TEAD1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.29 | 1.12 | 1.72 | n/a | n/a | |||
| CEBPB_HUMAN | 0.36 | 1.45 | 1.61 | n/a | No Hit | |||
| SMC3_HUMAN | -0.19 | 1.07 | 1.85 | n/a | n/a | |||
| TEAD1_HUMAN | -1.62 | 1.94 | 1.33 | 2.33 | Concordant |
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Motif analysis
