ADASTRA v1.6.10
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rs273506
chr19:18110837
C
>
T
Sequence
ctcatcggtctcctcaagatactg[C/T]aggttggtgacatcacctctctgg
ASB in cell types
HEK293 (embryonic kidney)
keratinocytes
ASB for transcription factors
SNAI2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN
n/a
1.72
1.00
0.01
1.33
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol
,
homa-b
,
homa-ir
GTEx eQTL
Adipose_Subcutaneous
,
Cells_Cultured_fibroblasts
,
Esophagus_Muscularis
,
Liver
,
Lung
,
Nerve_Tibial
,
Pituitary
,
Testis
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)