rs274032 chr7:23334940 C>G
- Sequence
ctccaggtacctggaaggatgcca[C/G]ggtttccctttggcttgtaaaata
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma) VCaP (prostate carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- EP300_HUMAN JUN_HUMAN BCL3_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 0.18 | 1.75 | 1.88 | n/a | n/a | |||
| JUN_HUMAN | -0.23 | 1.19 | 2.03 | n/a | No Hit | |||
| BCL3_HUMAN | -0.52 | 1.23 | 2.00 | n/a | n/a | |||
| GCR_HUMAN | -0.68 | 1.78 | 2.00 | n/a | No Hit | |||
| FOXA2_HUMAN | 0.35 | 1.06 | 1.63 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP hdl cholesterol, hdl cholesterol change with statins, obesity with early age of onset (age >2), parkinsons disease, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood