rs2742624 chr22:45280797 A>G
- Sequence
gacattttctgtgtgctgaagata[A/G]ggatctgatcatccgctctctgca
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- GATA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA2_HUMAN | 2.17 | -0.96 | 2.00 | -4.95 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Small_Intestine_Terminal_Ileum, Thyroid, Whole_Blood