rs2744078 chr10:42866841 C>T
- Sequence
acgaggagttccacgcagtagcca[C/T]gaggtggcaccgcagactcgctac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) Peyer's patch A549 (lung carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN KDM5B_HUMAN EZH2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.82 | -0.17 | 1.57 | -5.93 | Concordant | |||
| RAD21_HUMAN | 1.86 | -0.55 | 1.83 | n/a | n/a | |||
| KDM5B_HUMAN | 2.28 | -1.78 | 1.50 | n/a | n/a | |||
| EZH2_HUMAN | 1.92 | n/a | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | 0.94 | -0.26 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood