rs2744708 chr1:22180358 A>G
- Sequence
agcagcacacaatagccaaaaagg[A/G]gaagtaacccaagtgtccatcaat
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- PKNX1_HUMAN ARI1B_HUMAN KDM1A_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -1.62 | 2.25 | 1.33 | n/a | No Hit | |||
| ARI1B_HUMAN | -1.84 | 1.65 | 1.33 | n/a | n/a | |||
| KDM1A_HUMAN | -1.02 | 1.68 | 1.33 | n/a | n/a | |||
| HDAC1_HUMAN | -0.68 | 1.43 | 1.33 | n/a | n/a | |||
| TAL1_HUMAN | -1.62 | 1.78 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood