rs2783122 chr13:79529143 T>C
- Sequence
atgagaaagtggagcttcatagtg[T/C]ttaagtgattagcttgaggtcaca
- ASB in cell types
- D283 Med (medulloblastoma) HEK293T (embryonic kidney) D341 Med (medulloblastoma)
- ASB for transcription factors
- OTX2_HUMAN NDF1_HUMAN PKNX1_HUMAN PBX3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| OTX2_HUMAN | -0.29 | 1.19 | 1.65 | n/a | No Hit | |||
| NDF1_HUMAN | n/a | 2.40 | 2.00 | n/a | No Hit | |||
| PKNX1_HUMAN | n/a | 0.69 | 5.00 | n/a | No Hit | |||
| PBX3_HUMAN | n/a | 2.28 | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Vagina