rs2786815 chr1:16621342 T>C
- Sequence
gatttggtggctgagggcccctgt[T/C]ctgagggccactctggagagcatg
- ASB in cell types
- HEK293 (embryonic kidney) Peyer's patch HEK293T (embryonic kidney) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN ZN654_HUMAN PRDM9_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.49 | 2.30 | 2.42 | n/a | No Hit | |||
| ZN654_HUMAN | n/a | 2.52 | 1.50 | n/a | n/a | |||
| PRDM9_HUMAN | n/a | 3.15 | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | -2.17 | 2.56 | 1.67 | n/a | No Hit | |||
| SP7_HUMAN | n/a | 2.92 | 2.00 | n/a | n/a |
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