rs2788473 chr7:158856589 T>C
- Sequence
gccgcagggcacgctgggcagtgc[T/C]tctgggccctctgctgctcctgct
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma) GM12878 (female B-cells) mammary epithelial cells
- ASB for transcription factors
- NRF1_HUMAN FOXK2_HUMAN TFAP4_HUMAN BC11B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 2.43 | -2.86 | 1.37 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.25 | 0.05 | 1.56 | n/a | n/a | |||
| TFAP4_HUMAN | 2.05 | -1.14 | 1.42 | n/a | No Hit | |||
| BC11B_HUMAN | 0.63 | 2.43 | 2.00 | n/a | n/a | |||
| THA11_HUMAN | 1.79 | -2.03 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pancreas, Pituitary, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood