rs2797078 chr10:27240620 C>A
- Sequence
cggcccggctccttcctcctcccc[C/A]ggggcgtgactaaggccacgaatc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) fetal bone marrow-derived mononuclear cells breast tumor tissue
- ASB for transcription factors
- MNT_HUMAN KMT2A_HUMAN HDAC2_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | -0.53 | 2.10 | 2.00 | n/a | n/a | |||
| KMT2A_HUMAN | 1.45 | 0.51 | 1.12 | n/a | n/a | |||
| HDAC2_HUMAN | -1.14 | 2.00 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | -0.86 | 1.35 | 1.78 | n/a | n/a | |||
| ESR1_HUMAN | -1.08 | 2.11 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood