rs27990 chr5:66864661 A>G
- Sequence
aattatgtccccccccgaaaatac[A/G]tggaagtcctaacccccaatactg
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) bipolar neuron LNCaP (prostate carcinoma) esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.17 | 1.92 | 1.46 | n/a | No Hit | |||
| RAD21_HUMAN | 0.76 | 0.24 | 1.95 | n/a | n/a |
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