rs27996 chr5:1345359 A>G
- Sequence
aagtgggggccatgtcgacgtgtg[A/G]ggagcctggtggaaggtgatactg
- ASB in cell types
- A549 (lung carcinoma) T47D (invasive ductal carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| A549 (lung carcinoma) | 1.17 | -0.29 | 2.00 | |||
| T47D (invasive ductal carcinoma) | 0.98 | -0.14 | 1.93 |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Esophagus_Mucosa, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach