rs2800783 chr1:164617855 C>T
- Sequence
atgtgtggatctcctttcagcagg[C/T]tctatctttacctccaaagtgctt
- ASB in cell types
- foreskin keratinocyte VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.12 | 0.37 | 1.37 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP diastolic blood pressure (dbp), fasting insulin, hip bone mineral density (bmd), homa-b, mitral annular calcium, stabilized warfarin dose