rs280501 chr19:10380646 C>T
- Sequence
ccattggcagctgctctgttctcc[C/T]tgctcgtcaccattggattttttt
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) H1 (embryonic stem cells) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CREB1_HUMAN SP1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.14 | 0.21 | 1.62 | n/a | No Hit | |||
| SP1_HUMAN | 1.18 | -0.43 | 1.61 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Coronary, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Skin_Sun_Exposed_Lower_leg