rs280502 chr19:10380799 G>T
- Sequence
gctggcactcggtggacggagacg[G/T]gggaggggcttgcgagaggcggga
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZN687_HUMAN SP2_HUMAN EGR2_HUMAN DDX20_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN687_HUMAN | -1.87 | 2.10 | 1.33 | n/a | n/a | |||
| SP2_HUMAN | -1.86 | 1.50 | 1.67 | -3.27 | Discordant | |||
| EGR2_HUMAN | -0.61 | 2.11 | 2.00 | 0.09 | Weak Concordant | |||
| DDX20_HUMAN | n/a | 2.33 | 2.50 | n/a | n/a | |||
| NFIB_HUMAN | -1.45 | 1.51 | 1.50 | n/a | n/a |
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Motif analysis
