rs283718 chr8:127294837 C>T
- Sequence
ctacatctcacagagctattaggt[C/T]tgtatacttccttgtgctctgctc
- ASB in cell types
- pancreatic ductal adenocarcinoma A549 (lung carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- ELF3_HUMAN FOXA1_HUMAN JUN_HUMAN E2F1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF3_HUMAN | -1.36 | 2.18 | 2.00 | n/a | No Hit | |||
| FOXA1_HUMAN | n/a | 2.11 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 0.71 | 0.21 | 1.53 | n/a | No Hit | |||
| E2F1_HUMAN | 1.92 | -1.77 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, college completion, late onset alzheimers disease, obesity with early age of onset (age >2)