rs28372757 chr19:16197389 G>A
- Sequence
tgaaacacggtatgttgggtcaag[G/A]ttcagtgaggctggttttcataac
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells)
- ASB for transcription factors
- NR2C1_HUMAN COT1_HUMAN KDM1A_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR2C1_HUMAN | 3.37 | -0.56 | 1.78 | -4.13 | Concordant | |||
| COT1_HUMAN | 0.79 | 0.48 | 1.67 | -4.01 | Concordant | |||
| KDM1A_HUMAN | 0.47 | n/a | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 1.23 | -0.57 | 1.78 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis