rs28375915 chr22:49960607 G>A
- Sequence
gcccgccgcacccggccctcgccc[G/A]cccgaagacaggcgccaagctgcc
- ASB in cell types
- HCT-116 (colon carcinoma) HAEC (human aortic endothelial cells)
- ASB for transcription factors
- SP1_HUMAN TF65_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP1_HUMAN | 1.04 | -0.62 | 1.33 | 2.57 | Discordant | |||
| TF65_HUMAN | 1.67 | n/a | 2.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Skin_Sun_Exposed_Lower_leg, Whole_Blood