rs28403616 chr19:48445425 A>C
- Sequence
agcacttgtaatagctgcctccag[A/C]gggtggactttctgattaagtgct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma) foreskin keratinocyte human brain microvascular endothelial cells
- ASB for transcription factors
- CTCF_HUMAN GATA3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.60 | 0.31 | 1.50 | -4.71 | Concordant | |||
| GATA3_HUMAN | 3.11 | -0.19 | 2.25 | n/a | No Hit | |||
| RAD21_HUMAN | 1.54 | -1.43 | 1.92 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellum, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid