rs28411823 chr14:58239891 C>T
- Sequence
taagtttcaggaaaaaagttacaa[C/T]ccgcgcccaacgtggggctcgaac
- ASB in cell types
- GM12878 (female B-cells) CD14+ monocytes A549 (lung carcinoma)
- ASB for transcription factors
- FOXK2_HUMAN STAT1_HUMAN ZN189_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 0.52 | 2.20 | 1.67 | n/a | n/a | |||
| STAT1_HUMAN | -2.23 | 1.80 | 2.50 | n/a | No Hit | |||
| ZN189_HUMAN | -1.97 | 1.89 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood