rs2841524 chr6:13615169 A>C
- Sequence
ttccgtggggtccatccggctcca[A/C]ggcggcctgcgctggccacgtgga
- ASB in cell types
- K562 (myelogenous leukemia) ascending aorta HCT-116 (colon carcinoma) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN KLF9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.82 | 1.01 | 1.52 | 1.68 | Weak Discordant | |||
| KLF9_HUMAN | 1.73 | -1.97 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid