rs2843019 chr1:119766535 C>T
- Sequence
gatagtgaggcagaatgataaata[C/T]acattatatctgacaggagaggtt
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN HM20A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.46 | 0.88 | 1.89 | -1.90 | Weak Concordant | |||
| ESR1_HUMAN | -1.08 | 1.04 | 2.12 | n/a | No Hit | |||
| HM20A_HUMAN | 1.90 | -1.70 | 1.33 | n/a | n/a |
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Motif analysis
