rs28434767 chr12:123436717 G>T
- Sequence
cgagaagaggaacggggaagttca[G/T]gggtgacggcaatcgccccagcct
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) HEK293T (embryonic kidney) monocyte-derived dendritic cells
- ASB for transcription factors
- ZBT11_HUMAN FOXK2_HUMAN CTCF_HUMAN ZN341_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT11_HUMAN | n/a | 2.69 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.11 | -1.80 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.41 | 0.76 | 1.22 | n/a | No Hit | |||
| ZN341_HUMAN | n/a | 2.33 | 2.00 | n/a | No Hit | |||
| GLIS1_HUMAN | -2.79 | 2.08 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood