rs28445692 chr1:178542757 G>C
- Sequence
ccccgacgcccccgcgcccccgcc[G/C]ggccccgcgcgctgcagccaccgc
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) erythroid cells HEK293 (embryonic kidney)
- ASB for transcription factors
- BCL6_HUMAN RAD21_HUMAN STAT1_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BCL6_HUMAN | 2.78 | -0.86 | 2.00 | n/a | No Hit | |||
| RAD21_HUMAN | 1.01 | 0.12 | 1.30 | n/a | n/a | |||
| STAT1_HUMAN | 1.14 | -2.74 | 2.12 | n/a | No Hit | |||
| GABP1_HUMAN | 1.83 | -1.46 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Nerve_Tibial, Spleen, Testis, Thyroid, Whole_Blood