rs28510464 chr8:9003199 T>G
- Sequence
aggagtcgacccgcgcctggctgt[T/G]ggcgccagctgccccgtccccaaa
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- ZN341_HUMAN GABP1_HUMAN NRF1_HUMAN MNT_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN341_HUMAN | 2.49 | -3.75 | 2.00 | n/a | No Hit | |||
| GABP1_HUMAN | 2.48 | n/a | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | 1.73 | -2.13 | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | 1.77 | -0.98 | 2.00 | n/a | n/a | |||
| GABPA_HUMAN | 1.55 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood