rs28522034 chr17:67221251 T>C
- Sequence
atccctagtcctcaccagcagatg[T/C]cagtagcacgtcccctgacttgtg
- ASB in cell types
- LNCaP (prostate carcinoma) neural cell HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.36 | -0.62 | 1.74 | -1.12 | Weak Concordant | |||
| RAD21_HUMAN | 2.26 | -0.81 | 1.70 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Lung, Nerve_Tibial, Spleen, Stomach