rs2854112 chr19:2273837 C>T
- Sequence
gcagcacttccggcggggtcgtgg[C/T]ctggagcgcttccgggtctgcaac
- ASB in cell types
- HEK293 (embryonic kidney) cranial neural crest cells GM12878 (female B-cells) lower leg skin
- ASB for transcription factors
- COT1_HUMAN AP2A_HUMAN FOXK2_HUMAN ZFHX2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | 3.27 | n/a | 1.67 | n/a | No Hit | |||
| AP2A_HUMAN | 2.71 | n/a | 2.00 | -4.77 | Concordant | |||
| FOXK2_HUMAN | 0.70 | 2.31 | 1.33 | n/a | n/a | |||
| ZFHX2_HUMAN | 2.10 | -1.93 | 2.00 | n/a | n/a | |||
| BC11B_HUMAN | 1.31 | -1.26 | 2.33 | n/a | n/a |
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Motif analysis
