rs285677 chr19:33795761 T>C
- Sequence
cgaagcggagactggggaggggcg[T/C]ccggggcgcggacctcggccgcgg
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN ZN341_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.57 | 1.23 | 1.71 | n/a | No Hit | |||
| BCL3_HUMAN | -0.23 | 1.13 | 1.50 | n/a | n/a | |||
| ZN341_HUMAN | 1.00 | n/a | 4.00 | n/a | No Hit | |||
| TYY1_HUMAN | 2.56 | -0.71 | 3.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.68 | 0.67 | 1.59 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Thyroid, Whole_Blood