rs2862002 chr3:175258887 A>G
- Sequence
ttggcctgcatcccatgagtaggc[A/G]gcagaaaaataaatatgcatgcgt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- GATA3_HUMAN NFIB_HUMAN FOS_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA3_HUMAN | n/a | 3.41 | 1.50 | n/a | No Hit | |||
| NFIB_HUMAN | n/a | 3.22 | 1.50 | n/a | n/a | |||
| FOS_HUMAN | n/a | 1.37 | 1.33 | n/a | n/a | |||
| CREB1_HUMAN | -3.06 | 2.25 | 3.75 | n/a | No Hit | |||
| REQU_HUMAN | n/a | 2.35 | 1.50 | n/a | n/a |
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