rs28625102 chr16:1301026 C>A
- Sequence
cccacggtgacacccactccaggg[C/A]catggccgtgtcccctgaggcacc
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) SK-BR-3 (breast adenocarcinoma) MDA-MB-453 (breast adenocarcinoma)
- ASB for transcription factors
- ZIC2_HUMAN AP2C_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZIC2_HUMAN | n/a | 2.29 | 2.00 | n/a | n/a | |||
| AP2C_HUMAN | 1.82 | -0.75 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Esophagus_Mucosa, Liver, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid