rs2862854 chr2:113069221 T>C
- Sequence
tttagtgtccatggagaagtgaga[T/C]gctatcacacaagaaaatcagtgc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- PKNX1_HUMAN FOS_HUMAN CTBP1_HUMAN RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 2.10 | 0.44 | 1.67 | n/a | No Hit | |||
| FOS_HUMAN | 1.94 | -1.75 | 1.33 | n/a | n/a | |||
| CTBP1_HUMAN | 1.86 | -1.50 | 1.33 | n/a | n/a | |||
| RFX1_HUMAN | 1.55 | -0.95 | 3.17 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Colon_Transverse, Esophagus_Mucosa, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Whole_Blood