rs2869886 chr19:52786803 G>C
- Sequence
cgcgcccaggactgaagccaggcc[G/C]gggcaggttggctggacctgggcg
- ASB in cell types
- K562 (myelogenous leukemia) liver MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte
- ASB for transcription factors
- SP1_HUMAN ELF1_HUMAN ZBT26_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SP1_HUMAN | 2.07 | -0.70 | 1.67 | -4.05 | Concordant | |||
| ELF1_HUMAN | 1.37 | -1.22 | 1.97 | n/a | No Hit | |||
| ZBT26_HUMAN | 2.00 | -1.69 | 1.33 | n/a | n/a | |||
| HDAC1_HUMAN | 1.80 | -0.81 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.27 | 0.05 | 1.92 | n/a | No Hit |
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Motif analysis
